Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs8050199 chr16:1690056 C/T 0 178 25.4 22.77 2.93 KM Plot
PCPG rs8050629 chr16:89581236 T/C 0.00022 177 26.78 25.53 19.2 KM Plot
PCPG rs8050694 chr16:89583695 G/A 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs8051247 chr16:89584022 G/T 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs8052076 chr16:89583809 C/T 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs8054978 chr16:1777122 C/G 2.55E-11 170 25.6 18.75 4.52 KM Plot
PCPG rs8057818 chr16:1755416 G/A 0.000482 176 25.47 19.3 6.1 KM Plot
PCPG rs8058769 chr16:1670919 C/A 0 175 25.47 22.77 2.93 KM Plot
PCPG rs8059367 chr16:1674441 G/T 0 174 25.4 22.77 2.93 KM Plot
PCPG rs8059968 chr16:89589125 G/A 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs8061025 chr16:89948397 G/A 0.000161 174 25.77 23.37 36.37 KM Plot
PCPG rs8063180 chr16:89594626 G/A 0.000235 176 27.6 25.28 19.2 KM Plot
PCPG rs8063636 chr16:1680545 G/C 0 177 25.53 18.2 2.93 KM Plot
PCPG rs8075480 chr17:80500712 G/A 4.45E-5 176 25.92 24.53 7.2 KM Plot
PCPG rs8077791 chr17:80511987 C/T 4.21E-5 178 25.97 19.72 7.2 KM Plot